GraTeLPy: graph-theoretic linear stability analysis.
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View ArticleExtinction, coexistence, and localized patterns of a bacterial population...
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View ArticleComputational prediction of the human-microbial oral interactome.
Publication Date: 2014 Feb 27 PMID: 24576332Authors: Coelho, E. D. - Arrais, J. P. - Matos, S. - Pereira, C. - Rosa, N. - Correia, M. J. - Barros, M. - Oliveira, J. L.Journal: BMC Syst BiolBACKGROUND:...
View ArticlemRNA translation and protein synthesis: an analysis of different modelling...
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View ArticleDifferential enrichment of regulatory motifs in the composite network of...
Publication Date: 2014 Feb 27 PMID: 24576339Authors: Hegde, S. R. - Pal, K. - Mande, S. C.Journal: BMC Syst BiolBACKGROUND: An important aspect of molecular interactions is the dynamics associated with...
View ArticleStress induced telomere shortening: longer life with less mutations?
Publication Date: 2014 Mar 1 PMID: 24580844Authors: Trusina, A.Journal: BMC Syst BiolBACKGROUND: Mutations accumulate as a result of DNA damage and imperfect DNA repair machinery. In higher eukaryotes...
View ArticleAn efficient graph theory based method to identify every minimal reaction set...
Publication Date: 2014 Mar 4 PMID: 24594118Authors: Jonnalagadda, S. - Srinivasan, R.Journal: BMC Syst BiolBACKGROUND: Development of cells with minimal metabolic functionality is gaining importance...
View ArticleA bioinformatics approach reveals novel interactions of the OVOL...
Publication Date: 2014 PMID: 24612742Authors: Roca, H. - Pande, M. - Huo, J. S. - Hernandez, J. - Cavalcoli, J. D. - Pienta, K. J. - McEachin, R. C.Journal: BMC Syst BiolBACKGROUND: Mesenchymal to...
View ArticleAn integrative modeling framework reveals plasticity of TGF-beta signaling.
Publication Date: 2014 Mar 12 PMID: 24618419Authors: Andrieux, G. - Le Borgne, M. - Theret, N.Journal: BMC Syst BiolBACKGROUND: The TGF-beta transforming growth factor is the most pleiotropic cytokine...
View ArticleComparisons of Shewanella strains based on genome annotations, modeling, and...
Publication Date: 2014 Mar 12 PMID: 24621294Authors: Ong, W. K. - Vu, T. T. - Lovendahl, K. N. - Llull, J. M. - Serres, M. H. - Romine, M. F. - Reed, J. L.Journal: BMC Syst BiolBACKGROUND: Shewanella...
View ArticleUsing a large-scale knowledge database on reactions and regulations to...
Publication Date: 2014 PMID: 24635915Authors: Blavy, P. - Gondret, F. - Lagarrigue, S. - van Milgen, J. - Siegel, A.Journal: BMC Syst BiolBACKGROUND: Most of the existing methods to analyze...
View ArticleA condition-specific codon optimization approach for improved heterologous...
Publication Date: 2014 PMID: 24636000Authors: Lanza, A. M. - Curran, K. A. - Rey, L. G. - Alper, H. S.Journal: BMC Syst BiolBACKGROUND: Heterologous gene expression is an important tool for synthetic...
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